HoloFood Data Portal

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MGYG000315346

Details for MGYG000315346, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Egerieicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Egerieicola
Cluster representative

MGYG000315346

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315346 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315346’s cluster representative genome MGYG000315346 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315346 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315346 Copy API Endpoint
Samples containing this genome

MGYG000315346’s cluster representative (MGYG000315346) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315346’s sequence. Because MGYG000315346 has been clustered with MGYG000315346 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315346.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315346

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.23 SAMEA10454446 Probiotic
0.23 SAMEA10454444 Probiotic
0.23 SAMEA9449836 Probiotic
0.23 SAMEA10145599 Control
0.22 SAMEA7571858 Probiotic
0.22 SAMEA10104971 Probiotic
0.22 SAMEA10104963 Control
0.22 SAMEA10104996 Prebiotic
0.22 SAMEA10145583 Control
0.22 SAMEA10159266 Control