MGYG000315287

Taxonomy

Mediterraneibacter pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter pullicola

Cluster representative

MGYG000318750

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318750 on MGnify
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Annotations

MGYG000315287’s cluster representative genome MGYG000318750 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318750 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315287 Copy API Endpoint

MGYG000315287’s cluster representative (MGYG000318750) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318750’s sequence. Because MGYG000315287 has been clustered with MGYG000318750 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315287.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318750

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7025236	SAMEA112905113	Probiotic
0.20	SAMEA10105015	SAMEA112904826	Probiotic
0.20	SAMEA10104992	SAMEA112905146	Prebiotic
0.20	SAMEA10454445	SAMEA112905269	Probiotic