HoloFood Data Portal

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MGYG000315088

Details for MGYG000315088, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatovivens Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Scatovivens
Cluster representative

MGYG000314101

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314101 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315088’s cluster representative genome MGYG000314101 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314101 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315088 Copy API Endpoint
Samples containing this genome

MGYG000315088’s cluster representative (MGYG000314101) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314101’s sequence. Because MGYG000315088 has been clustered with MGYG000314101 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315088.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314101

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571806 Control
1.00 SAMEA7697617 Prebiotic
1.00 SAMEA7571810 Prebiotic
0.96 SAMEA14099422 Control
0.94 SAMEA10104985 Control
0.94 SAMEA14099424 Prebiotic
0.93 SAMEA10145562 Control
0.92 SAMEA7697592 Control
0.92 SAMEA10455496 Control
0.91 SAMEA7025241 Probiotic