MGYG000315063

Taxonomy

Agathobaculum stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum stercoravium

Cluster representative

MGYG000313438

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313438 on MGnify
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Annotations

MGYG000315063’s cluster representative genome MGYG000313438 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313438 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315063 Copy API Endpoint

MGYG000315063’s cluster representative (MGYG000313438) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313438’s sequence. Because MGYG000315063 has been clustered with MGYG000313438 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315063.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313438

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571769	SAMEA112904793	Prebiotic
1.00	SAMEA7697588	SAMEA112905360	Probiotic
1.00	SAMEA10105015	SAMEA112904826	Probiotic
0.99	SAMEA10104926	SAMEA112905372	Prebiotic
0.99	SAMEA10105038	SAMEA112905309	Probiotic
0.98	SAMEA7571762	SAMEA112904862	Control
0.98	SAMEA10454447	SAMEA112904740	Prebiotic
0.94	SAMEA10455495	SAMEA112904921	Control
0.94	SAMEA10104970	SAMEA112905205	Probiotic
0.93	SAMEA7571848	SAMEA112905284	Prebiotic