HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000314843

Details for MGYG000314843, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas
Cluster representative

MGYG000318993

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318993 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314843’s cluster representative genome MGYG000318993 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318993 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314843 Copy API Endpoint
Samples containing this genome

MGYG000314843’s cluster representative (MGYG000318993) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318993’s sequence. Because MGYG000314843 has been clustered with MGYG000318993 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314843.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318993

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.23 SAMEA10104981 Probiotic
0.22 SAMEA9449863 Prebiotic
0.22 SAMEA7571791 Control
0.22 SAMEA9449913 Probiotic
0.22 SAMEA7571770 Probiotic
0.22 SAMEA10455473 Probiotic
0.22 SAMEA7571873 Prebiotic
0.22 SAMEA7697630 Control
0.22 SAMEA10104983 Control
0.22 SAMEA10104937 Prebiotic