MGYG000314837

Taxonomy

Alistipes finegoldii Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes finegoldii

Cluster representative

MGYG000311181

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311181 on MGnify
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Annotations

MGYG000314837’s cluster representative genome MGYG000311181 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311181 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314837 Copy API Endpoint

MGYG000314837’s cluster representative (MGYG000311181) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311181’s sequence. Because MGYG000314837 has been clustered with MGYG000311181 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314837.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311181

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA14095991	SAMEA112904755	Control
1.00	SAMEA10104974	SAMEA112904852	Probiotic
1.00	SAMEA10104977	SAMEA112905312	Control
1.00	SAMEA10104981	SAMEA112905362	Probiotic
1.00	SAMEA7571820	SAMEA112905089	Probiotic
1.00	SAMEA7697601	SAMEA112905311	Prebiotic
1.00	SAMEA10104978	SAMEA112905303	Control
1.00	SAMEA10104968	SAMEA112905092	Prebiotic
1.00	SAMEA14099422	SAMEA112905377	Control
1.00	SAMEA7025269	SAMEA112904942	Probiotic