HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000314599

Details for MGYG000314599, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Agathobaculum intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum intestinigallinarum
Cluster representative

MGYG000310077

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310077 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314599’s cluster representative genome MGYG000310077 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310077 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314599 Copy API Endpoint
Samples containing this genome

MGYG000314599’s cluster representative (MGYG000310077) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310077’s sequence. Because MGYG000314599 has been clustered with MGYG000310077 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314599.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310077

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Containment Sample accession Animal accession Treatment
0.97 SAMEA9449925 Prebiotic
0.96 SAMEA10104943 Probiotic
0.96 SAMEA10104999 Control
0.95 SAMEA7025269 Probiotic
0.95 SAMEA7571762 Control
0.94 SAMEA10104932 Control
0.94 SAMEA7722478 Control
0.93 SAMEA10105015 Probiotic
0.91 SAMEA10105065 Prebiotic
0.91 SAMEA10455488 Prebiotic