HoloFood Data Portal

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MGYG000314514

Details for MGYG000314514, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alistipes faecigallinarum Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes faecigallinarum
Cluster representative

MGYG000309230

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309230 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314514’s cluster representative genome MGYG000309230 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309230 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314514 Copy API Endpoint
Samples containing this genome

MGYG000314514’s cluster representative (MGYG000309230) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309230’s sequence. Because MGYG000314514 has been clustered with MGYG000309230 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314514.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309230

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Containment Sample accession Animal accession Treatment
0.27 SAMEA10130012 Prebiotic
0.27 SAMEA7571847 Prebiotic
0.26 SAMEA7571861 Control
0.26 SAMEA7722478 Control
0.25 SAMEA10105028 Probiotic
0.24 SAMEA7722474 Prebiotic
0.24 SAMEA7571773 Prebiotic
0.24 SAMEA7571775 Control
0.24 SAMEA7571814 Prebiotic
0.23 SAMEA14099424 Prebiotic