HoloFood Data Portal

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MGYG000314307

Details for MGYG000314307, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimicola cottocaccae Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Fimicola > Fimicola cottocaccae
Cluster representative

MGYG000319158

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319158 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314307’s cluster representative genome MGYG000319158 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319158 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314307 Copy API Endpoint
Samples containing this genome

MGYG000314307’s cluster representative (MGYG000319158) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319158’s sequence. Because MGYG000314307 has been clustered with MGYG000319158 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314307.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319158

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Containment Sample accession Animal accession Treatment
0.56 SAMEA9449896 Prebiotic
0.56 SAMEA10105015 Probiotic
0.55 SAMEA10104921 Prebiotic
0.54 SAMEA10145585 Control
0.53 SAMEA10104925 Control
0.53 SAMEA7697630 Control
0.50 SAMEA9449940 Prebiotic
0.46 SAMEA9449874 Prebiotic
0.46 SAMEA10159244 Probiotic
0.45 SAMEA9449860 Control