HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000314005

Details for MGYG000314005, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus sp900604335 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus sp900604335
Cluster representative

MGYG000316758

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316758 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314005’s cluster representative genome MGYG000316758 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316758 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314005 Copy API Endpoint
Samples containing this genome

MGYG000314005’s cluster representative (MGYG000316758) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316758’s sequence. Because MGYG000314005 has been clustered with MGYG000316758 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314005.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316758

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7025283 Control
0.22 SAMEA10104973 Probiotic
0.22 SAMEA10104923 Control
0.22 SAMEA9449864 Control
0.22 SAMEA10536118 Probiotic
0.21 SAMEA7571863 Probiotic
0.21 SAMEA7571762 Control
0.20 SAMEA10105036 Probiotic
0.20 SAMEA10105061 Control