HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000313975

Details for MGYG000313975, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gemmiger excrementigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger excrementigallinarum
Cluster representative

MGYG000320165

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320165 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313975’s cluster representative genome MGYG000320165 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320165 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313975 Copy API Endpoint
Samples containing this genome

MGYG000313975’s cluster representative (MGYG000320165) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320165’s sequence. Because MGYG000313975 has been clustered with MGYG000320165 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313975.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320165

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Containment Sample accession Animal accession Treatment
0.25 SAMEA7722476 Control
0.25 SAMEA10159262 Prebiotic
0.24 SAMEA7025251 Control
0.24 SAMEA9449943 Control
0.23 SAMEA7025282 Control
0.23 SAMEA7025260 Prebiotic
0.23 SAMEA10104993 Prebiotic
0.23 SAMEA9449947 Prebiotic
0.23 SAMEA7571795 Prebiotic
0.23 SAMEA7571863 Probiotic