HoloFood Data Portal

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MGYG000313962

Details for MGYG000313962, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthoplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Onthoplasma
Cluster representative

MGYG000313962

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313962 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313962’s cluster representative genome MGYG000313962 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313962 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313962 Copy API Endpoint
Samples containing this genome

MGYG000313962’s cluster representative (MGYG000313962) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313962’s sequence. Because MGYG000313962 has been clustered with MGYG000313962 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313962.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313962

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Containment Sample accession Animal accession Treatment
0.80 SAMEA9449892 Probiotic
0.79 SAMEA7571806 Control
0.78 SAMEA7697583 Probiotic
0.76 SAMEA10145575 Control
0.72 SAMEA10145568 Control
0.71 SAMEA7025246 Probiotic
0.65 SAMEA7697581 Probiotic
0.55 SAMEA10104992 Prebiotic
0.54 SAMEA9449908 Prebiotic
0.50 SAMEA10145564 Control