HoloFood Data Portal

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MGYG000313354

Details for MGYG000313354, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdivicinus faecavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Merdivicinus > Merdivicinus faecavium
Cluster representative

MGYG000307725

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307725 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313354’s cluster representative genome MGYG000307725 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307725 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313354 Copy API Endpoint
Samples containing this genome

MGYG000313354’s cluster representative (MGYG000307725) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307725’s sequence. Because MGYG000313354 has been clustered with MGYG000307725 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313354.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307725

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Containment Sample accession Animal accession Treatment
0.75 SAMEA7722476 Control
0.75 SAMEA7697598 Control
0.74 SAMEA7025242 Control
0.74 SAMEA14095991 Control
0.73 SAMEA9449898 Prebiotic
0.73 SAMEA10104932 Control
0.73 SAMEA7571782 Prebiotic
0.73 SAMEA10104989 Prebiotic
0.73 SAMEA10104997 Prebiotic
0.72 SAMEA14095989 Prebiotic