MGYG000313312

Taxonomy

Alistipes excrementigallinarum Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes excrementigallinarum

Cluster representative

MGYG000317766

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317766 on MGnify
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Annotations

MGYG000313312’s cluster representative genome MGYG000317766 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317766 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313312 Copy API Endpoint

MGYG000313312’s cluster representative (MGYG000317766) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317766’s sequence. Because MGYG000313312 has been clustered with MGYG000317766 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313312.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317766

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10145597	SAMEA112904983	Control
1.00	SAMEA9449963	SAMEA112905164	Probiotic
1.00	SAMEA9449944	SAMEA112905357	Control
1.00	SAMEA9449938	SAMEA112904995	Prebiotic
1.00	SAMEA9449962	SAMEA112905371	Control
1.00	SAMEA7025281	SAMEA112904979	Probiotic
1.00	SAMEA10105045	SAMEA112905221	Control
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA7571768	SAMEA112905198	Control
1.00	SAMEA7571863	SAMEA112905012	Probiotic