HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000313221

Details for MGYG000313221, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alistipes merdavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes merdavium
Cluster representative

MGYG000316309

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316309 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313221’s cluster representative genome MGYG000316309 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316309 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313221 Copy API Endpoint
Samples containing this genome

MGYG000313221’s cluster representative (MGYG000316309) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316309’s sequence. Because MGYG000313221 has been clustered with MGYG000316309 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313221.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316309

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Containment Sample accession Animal accession Treatment
0.35 SAMEA9449917 Probiotic
0.34 SAMEA7025283 Control
0.34 SAMEA7571781 Control
0.34 SAMEA10105026 Control
0.34 SAMEA9449958 Probiotic
0.34 SAMEA10104937 Prebiotic
0.33 SAMEA7571817 Control
0.31 SAMEA7571802 Control
0.30 SAMEA7571833 Prebiotic
0.30 SAMEA7025240 Probiotic