HoloFood Data Portal

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MGYG000313087

Details for MGYG000313087, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthocola_B stercoravium Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthocola_B > Onthocola_B stercoravium
Cluster representative

MGYG000314149

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314149 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313087’s cluster representative genome MGYG000314149 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314149 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313087 Copy API Endpoint
Samples containing this genome

MGYG000313087’s cluster representative (MGYG000314149) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314149’s sequence. Because MGYG000313087 has been clustered with MGYG000314149 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313087.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314149

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Containment Sample accession Animal accession Treatment
0.28 SAMEA10130076 Prebiotic
0.28 SAMEA10454442 Probiotic
0.28 SAMEA10455488 Prebiotic
0.28 SAMEA9449933 Prebiotic
0.27 SAMEA14095991 Control
0.27 SAMEA10454448 Prebiotic
0.26 SAMEA7025271 Probiotic
0.26 SAMEA9449947 Prebiotic
0.26 SAMEA7571788 Control
0.26 SAMEA7697576 Prebiotic