HoloFood Data Portal

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MGYG000313066

Details for MGYG000313066, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Prevotella sp000433175 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Prevotella > Prevotella sp000433175
Cluster representative

MGYG000317513

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317513 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313066’s cluster representative genome MGYG000317513 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317513 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313066 Copy API Endpoint
Samples containing this genome

MGYG000313066’s cluster representative (MGYG000317513) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317513’s sequence. Because MGYG000313066 has been clustered with MGYG000317513 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313066.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317513

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697633 Prebiotic
1.00 SAMEA10105051 Control
1.00 SAMEA7025285 Control
1.00 SAMEA7571843 Prebiotic
1.00 SAMEA7571768 Control
1.00 SAMEA7571845 Control
1.00 SAMEA7697608 Control
1.00 SAMEA7025287 Prebiotic
1.00 SAMEA7697607 Control
1.00 SAMEA9449933 Prebiotic