HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000313036

Details for MGYG000313036, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter
Cluster representative

MGYG000314054

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314054 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313036’s cluster representative genome MGYG000314054 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314054 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313036 Copy API Endpoint
Samples containing this genome

MGYG000313036’s cluster representative (MGYG000314054) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314054’s sequence. Because MGYG000313036 has been clustered with MGYG000314054 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313036.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314054

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10105037 Probiotic
1.00 SAMEA10104984 Control
1.00 SAMEA7025258 Probiotic
1.00 SAMEA10105060 Control
1.00 SAMEA10104965 Prebiotic
1.00 SAMEA7697634 Control
1.00 SAMEA7571846 Prebiotic
1.00 SAMEA9449881 Control
1.00 SAMEA10159248 Prebiotic
1.00 SAMEA10159272 Probiotic