HoloFood Data Portal

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MGYG000313016

Details for MGYG000313016, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia avistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia avistercoris
Cluster representative

MGYG000313016

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313016 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313016’s cluster representative genome MGYG000313016 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313016 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313016 Copy API Endpoint
Samples containing this genome

MGYG000313016’s cluster representative (MGYG000313016) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313016’s sequence. Because MGYG000313016 has been clustered with MGYG000313016 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313016.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313016

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Containment Sample accession Animal accession Treatment
0.75 SAMEA9449885 Control
0.74 SAMEA7571820 Probiotic
0.74 SAMEA10145564 Control
0.74 SAMEA7025245 Probiotic
0.73 SAMEA7025266 Probiotic
0.73 SAMEA10104922 Prebiotic
0.73 SAMEA7697592 Control
0.73 SAMEA7722473 Prebiotic
0.73 SAMEA7025260 Prebiotic
0.72 SAMEA7571800 Probiotic