MGYG000312723

Taxonomy

Lachnoclostridium_A avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A avicola

Cluster representative

MGYG000312723

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312723 on MGnify
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Annotations

MGYG000312723’s cluster representative genome MGYG000312723 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312723 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312723 Copy API Endpoint

MGYG000312723’s cluster representative (MGYG000312723) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312723’s sequence. Because MGYG000312723 has been clustered with MGYG000312723 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312723.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312723

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10158036	SAMEA112904843	Probiotic
1.00	SAMEA7025238	SAMEA112905325	Probiotic
1.00	SAMEA7571802	SAMEA112905125	Control
1.00	SAMEA7697588	SAMEA112905360	Probiotic
1.00	SAMEA7025266	SAMEA112905005	Probiotic
1.00	SAMEA7025267	SAMEA112904847	Control
1.00	SAMEA7025279	SAMEA112904909	Probiotic
1.00	SAMEA7571847	SAMEA112905358	Prebiotic
1.00	SAMEA7025271	SAMEA112905138	Probiotic
1.00	SAMEA7571840	SAMEA112905099	Probiotic