HoloFood Data Portal

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MGYG000312640

Details for MGYG000312640, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ligilactobacillus aviarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus aviarius
Cluster representative

MGYG000318110

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318110 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312640’s cluster representative genome MGYG000318110 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318110 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312640 Copy API Endpoint
Samples containing this genome

MGYG000312640’s cluster representative (MGYG000318110) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318110’s sequence. Because MGYG000312640 has been clustered with MGYG000318110 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312640.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318110

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Containment Sample accession Animal accession Treatment
0.56 SAMEA7025246 Probiotic
0.56 SAMEA10454447 Prebiotic
0.56 SAMEA9449895 Probiotic
0.56 SAMEA7571848 Prebiotic
0.56 SAMEA7025263 Control
0.55 SAMEA10130022 Control
0.55 SAMEA10105010 Prebiotic
0.55 SAMEA7697608 Control
0.55 SAMEA9449944 Control
0.55 SAMEA9449875 Prebiotic