HoloFood Data Portal

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MGYG000312314

Details for MGYG000312314, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Tidjanibacter faecipullorum Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Tidjanibacter > Tidjanibacter faecipullorum
Cluster representative

MGYG000308044

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308044 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312314’s cluster representative genome MGYG000308044 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308044 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312314 Copy API Endpoint
Samples containing this genome

MGYG000312314’s cluster representative (MGYG000308044) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308044’s sequence. Because MGYG000312314 has been clustered with MGYG000308044 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312314.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308044

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Containment Sample accession Animal accession Treatment
0.37 SAMEA10105021 Probiotic
0.37 SAMEA9449918 Probiotic
0.36 SAMEA7571768 Control
0.36 SAMEA7697609 Probiotic
0.35 SAMEA10105052 Control
0.34 SAMEA10130076 Prebiotic
0.32 SAMEA10105025 Prebiotic
0.31 SAMEA10105073 Prebiotic
0.31 SAMEA10145585 Control
0.31 SAMEA7722479 Prebiotic