HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000312267

Details for MGYG000312267, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimonas gallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Fimimonas > Fimimonas gallinarum
Cluster representative

MGYG000309765

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309765 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312267’s cluster representative genome MGYG000309765 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309765 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312267 Copy API Endpoint
Samples containing this genome

MGYG000312267’s cluster representative (MGYG000309765) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309765’s sequence. Because MGYG000312267 has been clustered with MGYG000309765 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312267.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309765

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Containment Sample accession Animal accession Treatment
0.31 SAMEA9449908 Prebiotic
0.30 SAMEA9449839 Control
0.30 SAMEA7571850 Prebiotic
0.29 SAMEA7571769 Prebiotic
0.28 SAMEA9449844 Control
0.27 SAMEA7571853 Prebiotic
0.27 SAMEA7571781 Control
0.26 SAMEA9449896 Prebiotic
0.26 SAMEA7571832 Control
0.26 SAMEA7571774 Control