MGYG000312029

Taxonomy

Ruthenibacterium merdavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Ruthenibacterium > Ruthenibacterium merdavium

Cluster representative

MGYG000310100

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310100 on MGnify
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Annotations

MGYG000312029’s cluster representative genome MGYG000310100 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310100 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312029 Copy API Endpoint

MGYG000312029’s cluster representative (MGYG000310100) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310100’s sequence. Because MGYG000312029 has been clustered with MGYG000310100 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312029.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310100

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025280	SAMEA112905349	Probiotic
1.00	SAMEA9449952	SAMEA112905334	Probiotic
1.00	SAMEA7697609	SAMEA112905326	Probiotic
1.00	SAMEA9449947	SAMEA112905276	Prebiotic
1.00	SAMEA7697607	SAMEA112904861	Control
1.00	SAMEA10105021	SAMEA112905307	Probiotic
1.00	SAMEA7571827	SAMEA112905382	Probiotic
1.00	SAMEA7025282	SAMEA112905191	Control
1.00	SAMEA7025286	SAMEA112904985	Prebiotic
1.00	SAMEA7697603	SAMEA112904932	Probiotic