HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000312010

Details for MGYG000312010, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas merdigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas merdigallinarum
Cluster representative

MGYG000316096

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316096 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312010’s cluster representative genome MGYG000316096 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316096 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312010 Copy API Endpoint
Samples containing this genome

MGYG000312010’s cluster representative (MGYG000316096) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316096’s sequence. Because MGYG000312010 has been clustered with MGYG000316096 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312010.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316096

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Containment Sample accession Animal accession Treatment
0.24 SAMEA7571810 Prebiotic
0.24 SAMEA10104987 Control
0.23 SAMEA10104978 Control
0.23 SAMEA9449940 Prebiotic
0.23 SAMEA10455497 Probiotic
0.23 SAMEA10145597 Control
0.23 SAMEA9449881 Control
0.23 SAMEA7697583 Probiotic
0.23 SAMEA10105039 Probiotic
0.22 SAMEA7571850 Prebiotic