HoloFood Data Portal

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MGYG000311987

Details for MGYG000311987, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter avistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter > Dysosmobacter avistercoris
Cluster representative

MGYG000307928

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307928 on MGnify
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Annotations

MGYG000311987’s cluster representative genome MGYG000307928 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307928 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311987 Copy API Endpoint
Samples containing this genome

MGYG000311987’s cluster representative (MGYG000307928) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307928’s sequence. Because MGYG000311987 has been clustered with MGYG000307928 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311987.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307928

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Containment Sample accession Animal accession Treatment
0.94 SAMEA7025282 Control
0.94 SAMEA7025271 Probiotic
0.94 SAMEA10104993 Prebiotic
0.94 SAMEA7025277 Control
0.93 SAMEA9449947 Prebiotic
0.93 SAMEA7025242 Control
0.93 SAMEA7025260 Prebiotic
0.93 SAMEA7697617 Prebiotic
0.93 SAMEA7571814 Prebiotic
0.93 SAMEA9449873 Prebiotic