HoloFood Data Portal

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MGYG000311768

Details for MGYG000311768, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Adamsella Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella
Cluster representative

MGYG000315426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315426 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311768’s cluster representative genome MGYG000315426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315426 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311768 Copy API Endpoint
Samples containing this genome

MGYG000311768’s cluster representative (MGYG000315426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315426’s sequence. Because MGYG000311768 has been clustered with MGYG000315426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311768.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315426

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Containment Sample accession Animal accession Treatment
0.29 SAMEA10455483 Prebiotic
0.29 SAMEA10104959 Prebiotic
0.29 SAMEA10105011 Prebiotic
0.29 SAMEA9449896 Prebiotic
0.28 SAMEA7697586 Prebiotic
0.28 SAMEA7571808 Control
0.28 SAMEA9449843 Probiotic
0.27 SAMEA7571797 Control
0.27 SAMEA7368182 Prebiotic
0.26 SAMEA7571847 Prebiotic