HoloFood Data Portal

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MGYG000311525

Details for MGYG000311525, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides fragilis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides fragilis
Cluster representative

MGYG000318281

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318281 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311525’s cluster representative genome MGYG000318281 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318281 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311525 Copy API Endpoint
Samples containing this genome

MGYG000311525’s cluster representative (MGYG000318281) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318281’s sequence. Because MGYG000311525 has been clustered with MGYG000318281 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311525.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318281

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Containment Sample accession Animal accession Treatment
0.25 SAMEA7025274 Probiotic
0.25 SAMEA7025288 Control
0.25 SAMEA7697620 Prebiotic
0.25 SAMEA7571856 Probiotic
0.25 SAMEA7697623 Probiotic
0.25 SAMEA7571863 Probiotic
0.25 SAMEA7571864 Probiotic
0.25 SAMEA7697607 Control
0.24 SAMEA7697630 Control
0.24 SAMEA7571766 Control