HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311445

Details for MGYG000311445, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limiplasma merdipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-74 > Limiplasma > Limiplasma merdipullorum
Cluster representative

MGYG000311264

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311264 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311445’s cluster representative genome MGYG000311264 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311264 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311445 Copy API Endpoint
Samples containing this genome

MGYG000311445’s cluster representative (MGYG000311264) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311264’s sequence. Because MGYG000311445 has been clustered with MGYG000311264 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311445.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311264

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Containment Sample accession Animal accession Treatment
0.82 SAMEA10454449 Prebiotic
0.81 SAMEA7025236 Probiotic
0.81 SAMEA14095989 Prebiotic
0.81 SAMEA7722473 Prebiotic
0.81 SAMEA10145556 Control
0.81 SAMEA7697584 Control
0.80 SAMEA10145601 Control
0.80 SAMEA7025247 Probiotic
0.80 SAMEA7025242 Control
0.80 SAMEA14409936 Control