MGYG000311414

Taxonomy

Fimihabitans intestinipullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Fimihabitans > Fimihabitans intestinipullorum

Cluster representative

MGYG000317238

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317238 on MGnify
 Show other genomes in cluster

Annotations

MGYG000311414’s cluster representative genome MGYG000317238 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317238 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311414 Copy API Endpoint

MGYG000311414’s cluster representative (MGYG000317238) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317238’s sequence. Because MGYG000311414 has been clustered with MGYG000317238 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311414.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317238

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697576	SAMEA112904922	Prebiotic
0.99	SAMEA14099424	SAMEA112905085	Prebiotic
0.99	SAMEA7722476	SAMEA112904871	Control
0.99	SAMEA7571823	SAMEA112904842	Probiotic
0.99	SAMEA10104961	SAMEA112904891	Probiotic
0.99	SAMEA7025251	SAMEA112905290	Control
0.98	SAMEA10145564	SAMEA112905104	Control
0.98	SAMEA9449963	SAMEA112905164	Probiotic
0.98	SAMEA10159267	SAMEA112905062	Control
0.98	SAMEA7571832	SAMEA112905299	Control