HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311365

Details for MGYG000311365, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fusicatenibacter intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fusicatenibacter > Fusicatenibacter intestinigallinarum
Cluster representative

MGYG000309788

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309788 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311365’s cluster representative genome MGYG000309788 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309788 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311365 Copy API Endpoint
Samples containing this genome

MGYG000311365’s cluster representative (MGYG000309788) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309788’s sequence. Because MGYG000311365 has been clustered with MGYG000309788 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311365.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309788

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025282 Control
0.89 SAMEA7025274 Probiotic
0.89 SAMEA10104953 Prebiotic
0.89 SAMEA7571790 Prebiotic
0.89 SAMEA7571851 Prebiotic
0.88 SAMEA7571817 Control
0.88 SAMEA7722478 Control
0.88 SAMEA10159267 Control
0.88 SAMEA7697637 Prebiotic
0.88 SAMEA7025239 Probiotic