HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311326

Details for MGYG000311326, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecalibacterium gallistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecalibacterium > Faecalibacterium gallistercoris
Cluster representative

MGYG000308025

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308025 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311326’s cluster representative genome MGYG000308025 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308025 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311326 Copy API Endpoint
Samples containing this genome

MGYG000311326’s cluster representative (MGYG000308025) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308025’s sequence. Because MGYG000311326 has been clustered with MGYG000308025 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311326.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308025

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Containment Sample accession Animal accession Treatment
0.88 SAMEA7025275 Probiotic
0.88 SAMEA7025289 Control
0.88 SAMEA7722479 Prebiotic
0.88 SAMEA10159267 Control
0.88 SAMEA7571795 Prebiotic
0.88 SAMEA7025236 Probiotic
0.88 SAMEA9449916 Probiotic
0.88 SAMEA7025248 Probiotic
0.88 SAMEA7722478 Control
0.88 SAMEA9449908 Prebiotic