HoloFood Data Portal

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MGYG000311184

Details for MGYG000311184, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ventrisoma faecale Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Ventrisoma > Ventrisoma faecale
Cluster representative

MGYG000318167

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318167 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311184’s cluster representative genome MGYG000318167 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318167 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311184 Copy API Endpoint
Samples containing this genome

MGYG000311184’s cluster representative (MGYG000318167) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318167’s sequence. Because MGYG000311184 has been clustered with MGYG000318167 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311184.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318167

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Containment Sample accession Animal accession Treatment
0.96 SAMEA10104977 Control
0.95 SAMEA10145556 Control
0.95 SAMEA10455501 Probiotic
0.95 SAMEA7722474 Prebiotic
0.95 SAMEA7571820 Probiotic
0.95 SAMEA7571777 Control
0.94 SAMEA7025255 Prebiotic
0.93 SAMEA10104911 Probiotic
0.93 SAMEA9449843 Probiotic
0.93 SAMEA7571810 Prebiotic