HoloFood Data Portal

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MGYG000310982

Details for MGYG000310982, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ruthenibacterium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Ruthenibacterium
Cluster representative

MGYG000315476

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315476 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310982’s cluster representative genome MGYG000315476 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315476 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310982 Copy API Endpoint
Samples containing this genome

MGYG000310982’s cluster representative (MGYG000315476) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315476’s sequence. Because MGYG000310982 has been clustered with MGYG000315476 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310982.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315476

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Containment Sample accession Animal accession Treatment
0.40 SAMEA10104932 Control
0.40 SAMEA10104908 Control
0.39 SAMEA10145601 Control
0.39 SAMEA10104981 Probiotic
0.38 SAMEA7025262 Control
0.38 SAMEA7571806 Control
0.38 SAMEA10104967 Prebiotic
0.38 SAMEA7571812 Control
0.38 SAMEA10104984 Control
0.37 SAMEA9449833 Probiotic