HoloFood Data Portal

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MGYG000310767

Details for MGYG000310767, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdimonas faecis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Merdimonas > Merdimonas faecis
Cluster representative

MGYG000308317

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308317 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310767’s cluster representative genome MGYG000308317 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308317 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310767 Copy API Endpoint
Samples containing this genome

MGYG000310767’s cluster representative (MGYG000308317) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308317’s sequence. Because MGYG000310767 has been clustered with MGYG000308317 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310767.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308317

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Containment Sample accession Animal accession Treatment
0.91 SAMEA7025277 Control
0.91 SAMEA7571845 Control
0.90 SAMEA7025236 Probiotic
0.89 SAMEA7571767 Control
0.88 SAMEA9449916 Probiotic
0.88 SAMEA7571827 Probiotic
0.88 SAMEA10455483 Prebiotic
0.87 SAMEA7025269 Probiotic
0.87 SAMEA7025276 Control
0.87 SAMEA7025283 Control