MGYG000310754

Taxonomy

Coproplasma avicola Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma avicola

Cluster representative

MGYG000314257

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314257 on MGnify
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Annotations

MGYG000310754’s cluster representative genome MGYG000314257 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314257 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310754 Copy API Endpoint

MGYG000310754’s cluster representative (MGYG000314257) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314257’s sequence. Because MGYG000310754 has been clustered with MGYG000314257 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310754.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314257

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Containment	Sample accession	Animal accession	Treatment
0.20	SAMEA10145576	SAMEA112904957	Control
0.20	SAMEA14409936	SAMEA112904743	Control
0.20	SAMEA10455483	SAMEA112905075	Prebiotic