HoloFood Data Portal

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MGYG000310655

Details for MGYG000310655, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heteroclostridium caecigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Heteroclostridium > Heteroclostridium caecigallinarum
Cluster representative

MGYG000317867

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317867 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310655’s cluster representative genome MGYG000317867 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317867 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310655 Copy API Endpoint
Samples containing this genome

MGYG000310655’s cluster representative (MGYG000317867) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317867’s sequence. Because MGYG000310655 has been clustered with MGYG000317867 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310655.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317867

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Containment Sample accession Animal accession Treatment
0.28 SAMEA10105041 Probiotic
0.28 SAMEA7368182 Prebiotic
0.28 SAMEA7571863 Probiotic
0.27 SAMEA7571790 Prebiotic
0.27 SAMEA10454448 Prebiotic
0.27 SAMEA10105015 Probiotic
0.25 SAMEA10130076 Prebiotic
0.25 SAMEA10104933 Control
0.25 SAMEA10105073 Prebiotic
0.24 SAMEA10159246 Prebiotic