MGYG000310440

Taxonomy

Copromonas sp900541255 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas sp900541255

Cluster representative

MGYG000314258

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314258 on MGnify
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Annotations

MGYG000310440’s cluster representative genome MGYG000314258 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314258 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310440 Copy API Endpoint

MGYG000310440’s cluster representative (MGYG000314258) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314258’s sequence. Because MGYG000310440 has been clustered with MGYG000314258 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310440.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314258

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449914	SAMEA112904779	Probiotic
1.00	SAMEA7571800	SAMEA112904785	Probiotic
1.00	SAMEA10104928	SAMEA112905211	Prebiotic
1.00	SAMEA10104932	SAMEA112904940	Control
1.00	SAMEA7025271	SAMEA112905138	Probiotic
1.00	SAMEA9449935	SAMEA112905305	Control
1.00	SAMEA7722479	SAMEA112905115	Prebiotic
1.00	SAMEA7571853	SAMEA112905112	Prebiotic
1.00	SAMEA10104961	SAMEA112904891	Probiotic
1.00	SAMEA7697636	SAMEA112905078	Prebiotic