HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310417

Details for MGYG000310417, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Prevotella sp000433175 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Prevotella > Prevotella sp000433175
Cluster representative

MGYG000317513

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317513 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310417’s cluster representative genome MGYG000317513 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317513 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310417 Copy API Endpoint
Samples containing this genome

MGYG000310417’s cluster representative (MGYG000317513) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317513’s sequence. Because MGYG000310417 has been clustered with MGYG000317513 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310417.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317513

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.49 SAMEA7697583 Probiotic
0.48 SAMEA7697636 Prebiotic
0.43 SAMEA7571778 Control
0.42 SAMEA7025272 Prebiotic
0.37 SAMEA9449908 Prebiotic
0.37 SAMEA7571773 Prebiotic
0.36 SAMEA9449965 Probiotic
0.32 SAMEA7697575 Control
0.32 SAMEA7697620 Prebiotic
0.31 SAMEA7025254 Prebiotic