HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310403

Details for MGYG000310403, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercoripullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoripullorum
Cluster representative

MGYG000310585

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310585 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310403’s cluster representative genome MGYG000310585 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310585 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310403 Copy API Endpoint
Samples containing this genome

MGYG000310403’s cluster representative (MGYG000310585) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310585’s sequence. Because MGYG000310403 has been clustered with MGYG000310585 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310403.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310585

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Containment Sample accession Animal accession Treatment
0.90 SAMEA10105009 Prebiotic
0.89 SAMEA9449894 Probiotic
0.89 SAMEA7025256 Prebiotic
0.89 SAMEA7025283 Control
0.89 SAMEA7697583 Probiotic
0.89 SAMEA10159244 Probiotic
0.88 SAMEA7697617 Prebiotic
0.88 SAMEA7025242 Control
0.88 SAMEA10454442 Probiotic
0.88 SAMEA7025254 Prebiotic