MGYG000310358

Taxonomy

Choladocola avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Choladocola > Choladocola avistercoris

Cluster representative

MGYG000309822

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309822 on MGnify
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Annotations

MGYG000310358’s cluster representative genome MGYG000309822 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309822 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310358 Copy API Endpoint

MGYG000310358’s cluster representative (MGYG000309822) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309822’s sequence. Because MGYG000310358 has been clustered with MGYG000309822 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310358.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309822

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7722479	SAMEA112905115	Prebiotic
1.00	SAMEA7571823	SAMEA112904842	Probiotic
1.00	SAMEA10104984	SAMEA112904770	Control
1.00	SAMEA10105051	SAMEA112904756	Control
1.00	SAMEA7571845	SAMEA112904735	Control
1.00	SAMEA7571807	SAMEA112905097	Probiotic
1.00	SAMEA10104962	SAMEA112904849	Control
0.99	SAMEA10159256	SAMEA112904865	Probiotic
0.99	SAMEA9449951	SAMEA112904792	Prebiotic
0.99	SAMEA9449940	SAMEA112905148	Prebiotic