HoloFood Data Portal

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MGYG000310296

Details for MGYG000310296, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Avimicrobium caecorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Avimicrobium > Avimicrobium caecorum
Cluster representative

MGYG000310733

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310733 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310296’s cluster representative genome MGYG000310733 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310733 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310296 Copy API Endpoint
Samples containing this genome

MGYG000310296’s cluster representative (MGYG000310733) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310733’s sequence. Because MGYG000310296 has been clustered with MGYG000310733 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310296.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310733

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Containment Sample accession Animal accession Treatment
0.94 SAMEA10105037 Probiotic
0.93 SAMEA7571820 Probiotic
0.93 SAMEA7025269 Probiotic
0.93 SAMEA7697599 Control
0.92 SAMEA9449873 Prebiotic
0.92 SAMEA7697594 Probiotic
0.92 SAMEA14095991 Control
0.91 SAMEA7697598 Control
0.90 SAMEA7025250 Control
0.90 SAMEA10455476 Probiotic