HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310225

Details for MGYG000310225, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000320426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320426 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310225’s cluster representative genome MGYG000320426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320426 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310225 Copy API Endpoint
Samples containing this genome

MGYG000310225’s cluster representative (MGYG000320426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320426’s sequence. Because MGYG000310225 has been clustered with MGYG000320426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310225.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320426

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.98 SAMEA10105047 Control
0.98 SAMEA10104968 Prebiotic
0.97 SAMEA10454445 Probiotic
0.96 SAMEA9449866 Probiotic
0.96 SAMEA7722478 Control
0.94 SAMEA10104985 Control
0.93 SAMEA7697626 Probiotic
0.93 SAMEA10104921 Prebiotic
0.92 SAMEA7697586 Prebiotic
0.92 SAMEA7025241 Probiotic