MGYG000309981

Taxonomy

Lactobacillus crispatus Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus crispatus

Cluster representative

MGYG000317747

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317747 on MGnify
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Annotations

MGYG000309981’s cluster representative genome MGYG000317747 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317747 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309981 Copy API Endpoint

MGYG000309981’s cluster representative (MGYG000317747) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317747’s sequence. Because MGYG000309981 has been clustered with MGYG000317747 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309981.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317747

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10129997	SAMEA112905288	Probiotic
1.00	SAMEA7571790	SAMEA112905026	Prebiotic
0.99	SAMEA10158025	SAMEA112905026	Prebiotic
0.99	SAMEA9449858	SAMEA112904981	Probiotic
0.99	SAMEA9449835	SAMEA112904998	Probiotic
0.99	SAMEA9449863	SAMEA112905353	Prebiotic
0.99	SAMEA7368182	SAMEA112904823	Prebiotic
0.98	SAMEA10105009	SAMEA112905057	Prebiotic
0.98	SAMEA10145598	SAMEA112905287	Control
0.98	SAMEA7571789	SAMEA112905100	Probiotic