HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309974

Details for MGYG000309974, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faeciplasma gallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faeciplasma > Faeciplasma gallinarum
Cluster representative

MGYG000320790

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320790 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309974’s cluster representative genome MGYG000320790 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320790 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309974 Copy API Endpoint
Samples containing this genome

MGYG000309974’s cluster representative (MGYG000320790) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320790’s sequence. Because MGYG000309974 has been clustered with MGYG000320790 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309974.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320790

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Containment Sample accession Animal accession Treatment
0.24 SAMEA14095989 Prebiotic
0.23 SAMEA9449951 Prebiotic
0.23 SAMEA7025286 Prebiotic
0.23 SAMEA7697611 Prebiotic
0.22 SAMEA9449937 Probiotic
0.22 SAMEA10105012 Control
0.22 SAMEA10159263 Prebiotic
0.21 SAMEA10105004 Probiotic
0.21 SAMEA9449864 Control
0.21 SAMEA7697616 Probiotic