MGYG000309954

Taxonomy

Scatacola_A faecigallinarum Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > CAG-239 > Scatacola_A > Scatacola_A faecigallinarum

Cluster representative

MGYG000314579

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314579 on MGnify
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Annotations

MGYG000309954’s cluster representative genome MGYG000314579 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314579 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309954 Copy API Endpoint

MGYG000309954’s cluster representative (MGYG000314579) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314579’s sequence. Because MGYG000309954 has been clustered with MGYG000314579 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309954.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314579

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571844	SAMEA112904814	Control
1.00	SAMEA7571831	SAMEA112905310	Control
1.00	SAMEA7571841	SAMEA112904773	Probiotic
1.00	SAMEA7025287	SAMEA112905268	Prebiotic
1.00	SAMEA7571827	SAMEA112905382	Probiotic
1.00	SAMEA10454449	SAMEA112905153	Prebiotic
1.00	SAMEA7025288	SAMEA112905217	Control
1.00	SAMEA9449933	SAMEA112904886	Prebiotic
1.00	SAMEA7025282	SAMEA112905191	Control
1.00	SAMEA10105039	SAMEA112905019	Probiotic