HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309948

Details for MGYG000309948, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccalectryoclostridium excrementigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA3700 > Caccalectryoclostridium > Caccalectryoclostridium excrementigallinarum
Cluster representative

MGYG000311626

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311626 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309948’s cluster representative genome MGYG000311626 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311626 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309948 Copy API Endpoint
Samples containing this genome

MGYG000309948’s cluster representative (MGYG000311626) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311626’s sequence. Because MGYG000309948 has been clustered with MGYG000311626 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309948.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311626

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7722476 Control
1.00 SAMEA7025269 Probiotic
1.00 SAMEA7025283 Control
1.00 SAMEA7025262 Control
1.00 SAMEA7697626 Probiotic
1.00 SAMEA10104929 Prebiotic
1.00 SAMEA7571806 Control
1.00 SAMEA7697613 Prebiotic
1.00 SAMEA10455493 Probiotic
1.00 SAMEA9449933 Prebiotic