HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309775

Details for MGYG000309775, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limivivens intestinipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Limivivens > Limivivens intestinipullorum
Cluster representative

MGYG000309775

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309775 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309775’s cluster representative genome MGYG000309775 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309775 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309775 Copy API Endpoint
Samples containing this genome

MGYG000309775’s cluster representative (MGYG000309775) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309775’s sequence. Because MGYG000309775 has been clustered with MGYG000309775 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309775.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309775

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Containment Sample accession Animal accession Treatment
0.29 SAMEA7571795 Prebiotic
0.29 SAMEA7025256 Prebiotic
0.29 SAMEA7697602 Probiotic
0.29 SAMEA10145601 Control
0.28 SAMEA10104991 Prebiotic
0.28 SAMEA9449833 Probiotic
0.28 SAMEA9449916 Probiotic
0.28 SAMEA10145556 Control
0.28 SAMEA10104938 Prebiotic
0.27 SAMEA7025274 Probiotic