MGYG000309714

Taxonomy

Lactobacillus gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus gallinarum

Cluster representative

MGYG000314949

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314949 on MGnify
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Annotations

MGYG000309714’s cluster representative genome MGYG000314949 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314949 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309714 Copy API Endpoint

MGYG000309714’s cluster representative (MGYG000314949) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314949’s sequence. Because MGYG000309714 has been clustered with MGYG000314949 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309714.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314949

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571850	SAMEA112904906	Prebiotic
1.00	SAMEA7571849	SAMEA112905188	Prebiotic
1.00	SAMEA10105047	SAMEA112905233	Control
0.99	SAMEA7368187	SAMEA112904873	Control
0.98	SAMEA10130095	SAMEA112904906	Prebiotic
0.97	SAMEA10130098	SAMEA112905106	Prebiotic
0.96	SAMEA10130094	SAMEA112905188	Prebiotic
0.95	SAMEA10454449	SAMEA112905153	Prebiotic
0.95	SAMEA10145598	SAMEA112905287	Control
0.94	SAMEA10145594	SAMEA112904895	Control