HoloFood Data Portal

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MGYG000309680

Details for MGYG000309680, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gemmiger stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercorigallinarum
Cluster representative

MGYG000319054

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319054 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309680’s cluster representative genome MGYG000319054 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319054 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309680 Copy API Endpoint
Samples containing this genome

MGYG000309680’s cluster representative (MGYG000319054) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319054’s sequence. Because MGYG000309680 has been clustered with MGYG000319054 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309680.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319054

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Containment Sample accession Animal accession Treatment
0.22 SAMEA7571867 Control
0.22 SAMEA7025259 Prebiotic
0.22 SAMEA7697598 Control
0.22 SAMEA10105058 Control
0.22 SAMEA7697597 Probiotic
0.21 SAMEA10104971 Probiotic
0.21 SAMEA10159258 Probiotic
0.21 SAMEA7697623 Probiotic
0.21 SAMEA10454438 Probiotic
0.21 SAMEA7025237 Probiotic